🏆 Foundational Paper

Extended depth-of-field microscopy with a high-speed deformable mirror.

Shain William J, Vickers Nicholas A, Goldberg Bennett B, Bifano Thomas, Mertz Jerome

📰 Optics letters 📅 2017 📊 118 citations

Abstract

We present a wide-field fluorescence microscopy add-on that provides a fast, light-efficient extended depth-of-field (EDOF) using a deformable mirror with an update rate of 20 kHz. Out-of-focus contributions in the raw EDOF images are suppressed with a deconvolution algorithm derived directly from the microscope 3D optical transfer function. Demonstrations of the benefits of EDOF microscopy are shown with GCaMP-labeled mouse brain tissue.

🔬 Techniques

✨ Fluorophores

🧪 Sample Preparation

🏭 Microscope Brands

Olympus Thorlabs PCO

🔎 Objectives

💻 Software Details

General:
MATLAB Mathematica

🏛️ Research Organizations (ROR)

Affiliated research institutions:

📊 Figures

Fig. 1.

Schematic of an EDOF microscope. The vertical dashed line indicates the location of the intermediate image plane.

Fig. 2.

Standard versus EDOF imaging of 1 u03bcm diameter fluorescent beads embedded in PDMS. Images taken with a 20 u00d7 0.5 NA objective; R P = 2.21 mm , R DM = 2 mm , and the EDOF = 69 u03bcm [ Eq. (1) ] ...

Fig. 3.

High-speed images of 4 u03bcm diameter beads. (a) Standard and (b) extended DOFs taken at 472 fps in a reduced field-of-view with a 40 u00d7 0.8 NA objective; R P = 1.44 mm , R DM = 1.5 mm , and the E...

Fig. 4.

EOTF ( u03ba u22a5 ; D ) for a 20 u00d7 0.5 NA objective for focal sweep ranges D of (a) 0, (b) 5, (c) 10, and (d) 20 u03bcm. The EOTF calculated using Eq. (6) (orange) is a good approximation to the ...

Fig. 5.

Images of tissue paper labeled with a highlighter marker, taken with a 20 u00d7 0.5 NA objective; the EDOF = 69 u03bcm with 26 DM frames. (a) Raw EDOF image has poor contrast and few distinguishable f...

Fig. 6.

Images of GCaMP-labeled mouse brain neurons taken with a 20 u00d7 0.5 NA objective; the EDOF = 69 u03bcm with 26 DM frames. (a) Standard image shows an out-of-focus neuron in the marked area. (b) With...

Figure images are served from the NIH/NLM PubMed Central Open Access Subset or Europe PMC; copyright remains with the publishers and authors.

💬 Discussion

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