MesoSPIM

MesoSPIM

Microscope • 30 papers

3Dscript.server: true server-side 3D animation of microscopy images using a natural language-based syntax.

Bioinformatics (Oxford, England) 2021 📊 3

Abstract Summary Creating 3D animations from microscopy data is computationally expensive and requires high-end hardware. We therefore developed 3Dscript.server, a 3D animation software that runs...

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CellSeg3D, Self-supervised 3D cell segmentation for fluorescence microscopy.

eLife 2025 📊 4

Understanding the complex three-dimensional structure of cells is crucial across many disciplines in biology and especially in neuroscience. Here, we introduce a set of models...

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Light sheet imaging and interactive analysis of the cardiac structure in neonatal mice.

Journal of biophotonics 2023 📊 7

AbstractLight‐sheet microscopy (LSM) enables us to strengthen the understanding of cardiac development, injury, and regeneration in mammalian models. This emerging technique decouples laser illumination and...

Cell class-specific long-range axonal projections of neurons in mouse whisker-related somatosensory cortices.

eLife 2024 📊 7

Long-range axonal projections of diverse classes of neocortical excitatory neurons likely contribute to brain-wide interactions processing sensory, cognitive and motor signals. Here, we performed light-sheet...

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Light sheet fluorescence microscopy of cleared human eyes.

Communications biology 2023 📊 8

AbstractWe provide here a procedure enabling light sheet fluorescence microscopy (LSFM) of entire human eyes after iDISCO + -based clearing (ClearEye) and immunolabeling. Demonstrated here in four...

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The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples.

bioRxiv : the preprint server for biology 2023 📊 8

Abstract In 2015, we launched the mesoSPIM initiative ( www.mesospim.org ), an open-source project for making light-sheet microscopy of large cleared tissues more accessible. Meanwhile,...

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3D Reconstruction of the Clarified Rat Hindbrain Choroid Plexus.

Frontiers in cell and developmental biology 2021 📊 9

The choroid plexus (CP) acts as a regulated gate between blood and cerebrospinal fluid (CSF). Despite its simple histology (a monostratified cuboidal epithelium overlying a...

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Whole-brain microscopy reveals distinct temporal and spatial efficacy of anti-Aβ therapies.

EMBO molecular medicine 2023 📊 9

Many efforts targeting amyloid-β (Aβ) plaques for the treatment of Alzheimer's Disease thus far have resulted in failures during clinical trials. Regional and temporal heterogeneity...

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Tissue Clearing and Light Sheet Microscopy: Imaging the Unsectioned Adult Zebra Finch Brain at Cellular Resolution.

Frontiers in neuroanatomy 2019 📊 23

The inherent complexity of brain tissue, with brain cells intertwining locally and projecting to distant regions, has made three-dimensional visualization of intact brains a highly...

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