UltraMicroscope

UltraMicroscope

Microscope • 162 papers

⭐ Foundational

Anatomy and function of the vertebral column lymphatic network in mice.

Nature communications 2019 📊 128

AbstractCranial lymphatic vessels (LVs) are involved in the transport of fluids, macromolecules and central nervous system (CNS) immune responses. Little information about spinal LVs is available,...

⭐ Foundational

CUBIC pathology: three-dimensional imaging for pathological diagnosis.

Scientific reports 2017 📊 130

Abstract The examination of hematoxylin and eosin (H&E)-stained tissues on glass slides by conventional light microscopy is the foundation for histopathological diagnosis. However, this conventional...

💾 Data
⭐ Foundational

Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution.

Circulation research 2019 📊 135

Rationale: The cardiac conduction system (CCS) consists of distinct components including the sinoatrial node, atrioventricular node, His bundle, bundle branches, and Purkinje fibers. Despite an...

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⭐ Foundational

TISSUE CLEARING.

Nature reviews. Methods primers 2021 📊 163

Tissue clearing of gross anatomical samples was first described over a century ago and has only recently found widespread use in the field of microscopy....

3D ImagingConfocal Laser Scanning MicroscopyDarkfield MicroscopyDeconvolution MicroscopyExpansion MicroscopyFluorescence MicroscopyLight Sheet Fluorescence MicroscopyOptical Coherence TomographyOptical SectioningSecond Harmonic GenerationSpinning Disk Confocal MicroscopyTwo-Photon Excitation MicroscopyZ-Stack ImagingLaVision BioTec UltraMicroscope Light SheetUltraMicroscopeDrosophila melanogasterAiviaArivisFijiilastikImageJImarisinFormMetaMorphnapariStarDistATTO 647DAPIDiIGFPmCherryPropidium IodideSYTOWGAAdeno-Associated VirusAntigen RetrievalBrain OrganoidClear Lipid-exchanged Acrylamide-hybridized Rigid Imaging-compatible Tissue-hydrogelClear Unobstructed Brain Imaging Cocktails and Computational analysisClustered Regularly Interspaced Short Palindromic RepeatsCryosectioningEnhanced Fluorescence-Assisted Shotgun HistologyExpansion MicroscopyFixationGlutaraldehydeImmunofluorescenceImmunohistochemistryImmunolabeling-enabled Three-Dimensional Imaging of Solvent-Cleared OrgansImmunostainingOrganoidParaformaldehyde FixationPermeabilizationPolyethylene Glycol-Associated Solvent SystemRetinal OrganoidSequential Fluorescence In Situ HybridizationSpheroidStabilization to Harsh conditions via Intramolecular Epoxide Linkages to prevent DegradationTissue ClearingTransductionUltimate Three-Dimensional Imaging of Solvent-Cleared OrgansVibratomeLaVision BioTec UltraMicroscope Light SheetAiviaarivis Proarivis Vision4DFijiilastikImageJImarisinFormnapariStarDistMetaMorphBroad InstituteBroad Institute of Harvard University and MITHarvard UniversityInstitut für Schlaganfall- und DemenzforschungLudwig-Maximilians-Universität MünchenMassachusetts Institute of TechnologyMaximilians UniversityMITPicower Institute for Learning and MemoryRIKENThe UniversityUniversity and MITUniversity of TokyoYonsei UniversityThermo Fisher Scientific
⭐ Foundational

Combined small-molecule inhibition accelerates the derivation of functional cortical neurons from human pluripotent stem cells.

Nature biotechnology 2017 📊 170

Considerable progress has been made in converting human pluripotent stem cells (hPSCs) into functional neurons. However, the protracted timing of human neuron specification and functional...

⭐ Foundational

Anatomically Defined and Functionally Distinct Dorsal Raphe Serotonin Sub-systems.

Cell 2018 📊 429

The dorsal raphe (DR) constitutes a major serotonergic input to the forebrain and modulates diverse functions and brain states, including mood, anxiety, and sensory and...

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High-Dimensional Spatiotemporal Single-Cell and 3D Atlas of the Bone Marrow Microenvironment during Leukemic Progression.

bioRxiv : the preprint server for biology 2025 📊 1

Abstract The bone marrow microenvironment (BMME) is essential for hematopoiesis and immunity, yet spatiotemporal single-cell analysis during leukemogenesis remains challenging. We characterized the BMME in...

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Skin-iDISCO+: An optimized tissue-clearing and labeling protocol for morphometric analysis of human cutaneous vasculature.

STAR protocols 2025 📊 1

Tissue clearing enables deep imaging of long biological structures using light microscopy approaches. Protocols such as iDISCO are not currently available for human skin. Here,...

🏷️ 9 RRIDs

Chemical and mechanical patterning of tortoise skin scales occur in different regions of the head.

iScience 2025 📊 2

Vertebrate skin appendages are diverse micro-organs such as scales, feathers, and hair. These units typically develop from placodes, whose spatial patterning involves conserved chemical reaction-diffusion...

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Exacerbated sonic hedgehog signalling promotes a transition from chemical pre-patterning of chicken reticulate scales to mechanical skin folding.

Open biology 2025 📊 2

Many examples of self-organized embryonic patterning can be attributed to chemically mediated systems comprising interacting morphogens. However, mechanical patterning also contributes to the emergence of...

💻 Code 💾 Data

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