Ciona intestinalis

Ciona intestinalis

Organism • 46 papers

The homeodomain transcription factor Phox2 in the stellate ganglion of the squid Loligo pealei.

Biology open 2015

ABSTRACTHomeodomain transcription factors regulate development of embryos and cellular physiology in adult systems. Paired-type homeodomain genes constitute a subclass that has been particularly implicated in...

Molecular Dynamics Simulations with NAMD and Trajectory Analysis.

Methods in molecular biology (Clifton, N.J.) 2026

Molecular simulations offer a window into proteins' movements, which other methods fail to measure. The fractional, slight modifications of structure seen, for example, in molecular...

Analysis of Transient Receptor Potential Ion Channels in ME/CFS.

Methods in molecular biology (Clifton, N.J.) 2025

This chapter provides a comprehensive overview of methodologies currently employed to study ion channels, particularly transient receptor potential melastatin 3 (TRPM3) in the context of...

Noise Sources and Strategies for Signal Quality Improvement in Biological Imaging: A Review Focused on Calcium and Cell Membrane Voltage Imaging.

Biosensors 2026 📊 1

This review addresses the challenges of obtaining high-quality quantitative data in the optical imaging of membrane voltage and calcium dynamics. The paper provides a comprehensive...

Optimized smFISH Pipeline for Studying Nascent Transcription in Mouse Embryonic Tissue Samples.

Methods in molecular biology (Clifton, N.J.) 2025

Understanding the spatial and temporal dynamics of gene expression is crucial for unraveling molecular mechanisms underlying various biological processes. While traditional methods have offered insights...

Quantitative Live-Cell Ca2+ Imaging During Isotropic Cell Stretch.

Methods in molecular biology (Clifton, N.J.) 2023

Cell viability of many cell types strongly relies on their ability to adjust to mechanical conditions and alterations. Cellular mechanisms for sensing and responding to...

Bioluminescence as a functional tool for visualizing and controlling neuronal activity in vivo.

Neurophotonics 2024 📊 3

The use of bioluminescence as a reporter for physiology in neuroscience is as old as the discovery of the calcium-dependent photon emission of aequorin. Over...

mEMbrain: an interactive deep learning MATLAB tool for connectomic segmentation on commodity desktops.

bioRxiv : the preprint server for biology 2023 📊 3

Connectomics is fundamental in propelling our understanding of the nervous system’s organization, unearthing cells and wiring diagrams reconstructed from volume electron microscopy (EM) datasets. Such...

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