iSPIM

iSPIM

Microscope • 38 papers

⭐ Foundational

Influenza a virus assembly intermediates fuse in the cytoplasm.

PLoS pathogens 2014 📊 139

Reassortment of influenza viral RNA (vRNA) segments in co-infected cells can lead to the emergence of viruses with pandemic potential. Replication of influenza vRNA occurs...

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⭐ Foundational

Rapid image deconvolution and multiview fusion for optical microscopy.

Nature biotechnology 2020 📊 155

The contrast and resolution of images obtained with optical microscopes can be improved by deconvolution and computational fusion of multiple views of the same sample,...

Confocal Laser Scanning MicroscopyDeconvolution MicroscopyFluorescence MicroscopyLattice Light Sheet MicroscopyLight Sheet Fluorescence MicroscopyStructured Illumination MicroscopyWidefield Fluorescence MicroscopydiSPIMiSPIMLeica SP8Leica SP8 ConfocalLightsheet Z.1SP8Zeiss Lightsheet 7 Light SheetZeiss Lightsheet Z.1Zeiss Lightsheet Z.1 Light SheetCaenorhabditis elegansDrosophila melanogasterEscherichia coliMicroManagerZENAlexa Fluor 488Alexa Fluor 555DAPIEdUEGFPGFPmCherrymEmeraldmRFPPhalloidinRFPTagRFPTagRFP-TtdTomatoBlockingFixationGlutaraldehydeImmunolabeling-enabled Three-Dimensional Imaging of Solvent-Cleared OrgansPermeabilizationTissue ClearingTransfectionEmbryonic Stem CellHuman Osteosarcoma U2OSHuman T-cell Leukemia JurkatPrimary T CellsLeica SP8 ConfocalZeiss Lightsheet 7 Light SheetZeiss Lightsheet Z.1 Light SheetHuygensImageJImarisMicroManagerZENMATLABPythonCentre Thucydide - Analyse et Recherche en Relations InternationalesEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentHarvard Medical SchoolMinistry of DefenceModelica AssociationNational Institute of Allergy and Infectious DiseasesNational Institute of Arthritis and Musculoskeletal and Skin DiseasesNational Institute of Biomedical Imaging and BioengineeringNational Institute of Mental HealthNational Institutes of HealthNIHState Key Laboratory of Modern Optical InstrumentationUConn HealthUniversity of ChicagoUniversity of MarylandUniversity of Puerto Rico SystemUniversity School of MedicineYale UniversityZhejiang UniversityAbcamAddgeneCorningInvitrogenMatTekSigma-AldrichThermo Fisher ScientificVWRDonkeyGoatMouseRabbitCoherent OBIS sourcesdiodeHamamatsu Orca Flash 4.0Leica HyDPCO sCMOSpco.edge 4.2Photometrics EMCCDPhotometrics evolvesCMOS20x/1.0 NA40x/0.8 NA waterZeiss 10x/0.2 NA dryChroma ET470/40xPhotometrics ET525/50m
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⭐ Foundational

Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues.

Nature communications 2019 📊 168

Abstract Recent advances in optical clearing and light-sheet microscopy have provided unprecedented access to structural and molecular information from intact tissues. However, current light-sheet microscopes...

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⭐ Foundational

Dual-view plane illumination microscopy for rapid and spatially isotropic imaging.

Nature protocols 2014 📊 182

We describe the construction and use of a compact dual-view inverted selective plane illumination microscope (diSPIM) for time-lapse volumetric (4D) imaging of living samples at...

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⭐ Foundational

Accurate and versatile 3D segmentation of plant tissues at cellular resolution.

eLife 2020 📊 258

Quantitative analysis of plant and animal morphogenesis requires accurate segmentation of individual cells in volumetric images of growing organs. In the last years, deep learning...

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⭐ Foundational

Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans.

Proceedings of the National Academy of Sciences of the United States of America 2011 📊 288

The Caenorhabditis elegans embryo is a powerful model for studying neural development, but conventional imaging methods are either too slow or phototoxic to take full...

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⭐ Foundational

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Nature biotechnology 2013 📊 299

Optimal four-dimensional imaging requires high spatial resolution in all dimensions, high speed and minimal photobleaching and damage. We developed a dual-view, plane illumination microscope with...

⭐ Foundational

Tissue clearing and its applications in neuroscience.

Nature reviews. Neuroscience 2020 📊 518

State-of-the-art tissue-clearing methods provide subcellular-level optical access to intact tissues from individual organs and even to some entire mammals. When combined with light-sheet microscopy and...

3D ImagingConfocal Laser Scanning MicroscopyDeconvolution MicroscopyExpansion MicroscopyLattice Light Sheet MicroscopyLight Sheet Fluorescence MicroscopyStimulated Emission Depletion MicroscopyTwo-Photon Excitation MicroscopydiSPIMiSPIMLaVision BioTec UltraMicroscope Light SheetUltraMicroscopeCaenorhabditis elegansBigDataViewerFijiilastikImageJImarisYOLOvBFPECFPEGFPGFPPropidium IodideYFPAdeno-Associated VirusBrain OrganoidClear Lipid-exchanged Acrylamide-hybridized Rigid Imaging-compatible Tissue-hydrogelClear Unobstructed Brain Imaging Cocktails and Computational analysisExpansion MicroscopyFixationFluorescence In Situ HybridizationImmunohistochemistryImmunostainingIn Situ HybridizationLive ImagingOrganoidPassive CLARITY TechniquePermeabilizationStabilization to Harsh conditions via Intramolecular Epoxide Linkages to prevent DegradationThree-Dimensional Imaging of Solvent-Cleared OrgansTissue ClearingVibratomeWhole MountNeural Stem CellsPrimary AstrocytesPrimary MicrogliaLaVision BioTec UltraMicroscope Light SheetBigDataViewerFijiilastikImageJImarisJavaBroad InstituteCalifornia Institute of TechnologyCNRSEdythe Broad Institute of MIT and HarvardHelmholtz MunichHoward Hughes Medical InstituteINSERMInstitut für Schlaganfall- und DemenzforschungInstitute for Basic ScienceJanelia Research CampusLudwig-Maximilians-Universität MünchenMassachusetts Institute of TechnologyMax PlanckMax Planck InstituteMax Planck Institute of Molecular Cell Biology and GeneticsMaximilian UniversityMITPicower Institute for Learning and MemoryRIKENTechnical UniversityUniversity of OstravaUniversity of TokyoYonsei UniversityThermo Fisher ScientificsCMOS
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