Axio Imager

Axio Imager

Microscope • 21 papers

⭐ Foundational

Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR.

Bioinformatics (Oxford, England) 2022 📊 140

Abstract Motivation Stitching microscope images into a mosaic is an essential step in the analysis and visualization of large biological specimens, particularly human and animal...

📋 3 💻 Code 💾 Data
⭐ Foundational

Recruitment dynamics of ESCRT-III and Vps4 to endosomes and implications for reverse membrane budding.

eLife 2017 📊 144

The ESCRT machinery mediates reverse membrane scission. By quantitative fluorescence lattice light-sheet microscopy, we have shown that ESCRT-III subunits polymerize rapidly on yeast endosomes, together...

📋 1 💻 Code 💾 Data 🏷️ 3 RRIDs
⭐ Foundational

Coordinated binding of Vps4 to ESCRT-III drives membrane neck constriction during MVB vesicle formation.

The Journal of cell biology 2014 📊 171

Five endosomal sorting complexes required for transport (ESCRTs) mediate the degradation of ubiquitinated membrane proteins via multivesicular bodies (MVBs) in lysosomes. ESCRT-0, -I, and -II...

📋 1 💾 Data
⭐ Foundational

Identification of the elementary structural units of the DNA damage response.

Nature communications 2017 📊 174

AbstractHistone H2AX phosphorylation is an early signalling event triggered by DNA double-strand breaks (DSBs). To elucidate the elementary units of phospho-H2AX-labelled chromatin, we integrate super-resolution...

💾 Data
⭐ Foundational

Learning-Related Plasticity in Dendrite-Targeting Layer 1 Interneurons.

Neuron 2018 📊 205

A wealth of data has elucidated the mechanisms by which sensory inputs are encoded in the neocortex, but how these processes are regulated by the...

🏷️ 8 RRIDs
⭐ Foundational

Yolk sac macrophage progenitors traffic to the embryo during defined stages of development.

Nature communications 2018 📊 248

AbstractTissue macrophages in many adult organs originate from yolk sac (YS) progenitors, which invade the developing embryo and persist by means of local self-renewal. However,...

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⭐ Foundational

A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy.

Nature cancer 2022 📊 279

Cancer cells disseminate and seed in distant organs, where they can remain dormant for many years before forming clinically detectable metastases. Here we studied how...

💾 Data
⭐ Foundational

Motion model ultrasound localization microscopy for preclinical and clinical multiparametric tumor characterization.

Nature communications 2018 📊 269

Abstract Super-resolution imaging methods promote tissue characterization beyond the spatial resolution limits of the devices and bridge the gap between histopathological analysis and non-invasive imaging....

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⭐ Foundational

Autophagy initiation by ULK complex assembly on ER tubulovesicular regions marked by ATG9 vesicles.

Nature communications 2016 📊 279

Abstract Autophagosome formation requires sequential translocation of autophagy-specific proteins to membranes enriched in PI3P and connected to the ER. Preceding this, the earliest autophagy-specific structure...

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⭐ Foundational

Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning.

Nature neuroscience 2015 📊 311

Motor skill learning induces long-lasting reorganization of dendritic spines, principal sites of excitatory synapses, in the motor cortex. However, mechanisms that regulate these excitatory synaptic...

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